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Top Pkgs Packages

1

OpenGene

OpenGene, core libraries for NGS data analysis and bioinformatics in julia

2

PhyloNetworks

A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

3

BioSeq

Julia's package for working on Bioinformatics with DNA, RNA and Protein Sequences

4

FusionDirect

Detect gene fusion directly from raw fastq files

5

IntervalTrees

A data structure for efficient manipulation of sets of intervals

6

FastaIO

Utilities to read/write FASTA format files in Julia

7

PhyloTrees

Phylogenetic trees in Julia

8

Phylogenetics

The Julia package for analysis of evolution and phylogeny

9

ProgressiveAligner

progressive alignment scripts for protein sequences

10

XSim

simulate sequence data and complicated pedigree structures

11

Pathogen

Simulation and inference utilities for the spread of infectious diseases with Julia 1.0

12

BioArgParse

Extension to ArgParse.jl, enabling parsing of command line parameters to types in Bio.jl.

13

SpeedDate

Estimation of coalescence times between sequences.

14

Ensemble

Ensemble Samplers for Julia