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Top Pkgs Packages

1

PhyloNetworks

A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

2

OpenGene

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

3

Gillespie

Stochastic Gillespie-type simulations using Julia

4

BioSeq

Julia's package for working on Bioinformatics with DNA, RNA and Protein Sequences

5

FusionDirect

(No maintenance) Detect gene fusion directly from raw fastq files

6

IntervalTrees

A data structure for efficient manipulation of sets of intervals

7

FastaIO

Utilities to read/write FASTA format files in Julia

8

Pathogen

Simulation, visualization, and inference tools for modelling the spread of infectious diseases with Julia

9

ProgressiveAligner

progressive alignment scripts for protein sequences

10

Phylogenetics

The Julia package for analysis of evolution and phylogeny

11

PhyloTrees

Phylogenetic trees in Julia

12

Ensemble

Ensemble Samplers for Julia