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Top Pkgs Packages

1

OpenGene

OpenGene, core libraries for NGS data analysis and bioinformatics in julia

2

PhyloNetworks

A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

3

BioSeq

Julia's package for working on Bioinformatics with DNA, RNA and Protein Sequences

4

FusionDirect

Detect gene fusion directly from raw fastq files

5

HTSLIB

HTSLIB.jl is a julia wrapper of htslib for accessing common high-throughput sequencing data file formats such as BAM/SAM files

6

IntervalTrees

A data structure for efficient manipulation of sets of intervals

7

FastaIO

Utilities to read/write FASTA format files in Julia

8

PhyloTrees

Phylogenetic trees in Julia

9

ProgressiveAligner

progressive alignment scripts for protein sequences

10

XSim

simulate sequence data and complicated pedigree structures

11

Ensemble

Ensemble Samplers for Julia