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Top Packages Pkgs

1

Bio

Bioinformatics and Computational Biology Infrastructure for Julia

2

OpenGene

OpenGene, core libraries for NGS data analysis and bioinformatics in julia

3

BioSeq

Julia's package for working on Bioinformatics with DNA, RNA and Protein Sequences

4

PhyloNetworks

A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

5

HTSLIB

HTSLIB.jl is a julia wrapper of htslib for accessing common high-throughput sequencing data file formats such as BAM/SAM files

6

FusionDirect

Detect gene fusion directly from raw fastq files

7

IntervalTrees

A data structure for efficient manipulation of sets of intervals

8

FastaIO

Utilities to read/write FASTA format files in Julia

9

JWAS

Julia for Whole-genome Analyses Software

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PhyloTrees

Phylogenetic trees in Julia

11

Phylogenetics

The Julia package for analysis of evolution and phylogeny

12

ProgressiveAligner

progressive alignment scripts for protein sequences

13

VarianceComponentTest

Exact Variance Component Test for GWAS

14

XSim

simulate sequence data and complicated pedigree structures

15

BioArgParse

Extension to ArgParse.jl, enabling parsing of command line parameters to types in Bio.jl.

16

SpeedDate

Estimation of coalescence times between sequences.

17

Ensemble

Ensemble Samplers for Julia