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Top Pkgs Packages

1

OpenGene

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

2

PhyloNetworks

A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

3

Gillespie

Stochastic Gillespie-type simulations using Julia

4

BioSeq

Julia's package for working on Bioinformatics with DNA, RNA and Protein Sequences

5

FusionDirect

(No maintenance) Detect gene fusion directly from raw fastq files

6

IntervalTrees

A data structure for efficient manipulation of sets of intervals

7

FastaIO

Utilities to read/write FASTA format files in Julia

8

XSim

simulate sequence data and complicated pedigree structures

9

Pathogen

Simulation and inference utilities for the spread of infectious diseases with Julia

10

Phylogenetics

The Julia package for analysis of evolution and phylogeny

11

ProgressiveAligner

progressive alignment scripts for protein sequences

12

PhyloTrees

Phylogenetic trees in Julia

13

Ensemble

Ensemble Samplers for Julia