[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
A julia code generator for regular expressions
Biological sequences for the julia language
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Sequence alignment tools
A data structure for efficient manipulation of sets of intervals
For analysis of microbiome and microbial community data
Datastructures and algorithms for working with genetic variation
Fast, flexible zlib bindings.
Core types and interfaces for BioJulia packages
Tools for genomic features in Julia.
Fast composable IO streams
Nucleic and amino acid primitive types
FM-index for full-text search
Julia interface to APIs for various bio-related web services
Biological Sequence Substitution Models for Julia
Fully indexable dictionaries - access/rank/select operations
BGZF Stream
Interfaces to common external biological tools from julia scripts and programs
The Wavelet Matrix
Common data encoding algorithms
The BioJulia package for working with phylogenetic trees and geneologies.
A julia package to parse and write MMTF file
A companion package for Microbiome.jl for working with the Biobakery family of computational tools