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Top Pkgs Packages

1

Bio

Bioinformatics and Computational Biology Infrastructure for Julia

2

Automa

A julia code generator for regular expressions

3

YAML

Parse yer YAMLs

4

BioSequences

Biological sequences for the julia language

5

IntervalTrees

A data structure for efficient manipulation of sets of intervals

6

BufferedStreams

Fast composable IO streams

7

Libz

Fast, flexible zlib bindings.

8

BioStructures

A Julia package to read, write and manipulate macromolecular structures (particularly proteins)

9

BioAlignments

Sequence alignment tools

10

GeneticVariation

Datastructures and algorithms for working with genetic variation

11

Microbiome

For analysis of microbiome and microbial community data

12

FMIndexes

FM-index for full-text search

13

GenomicFeatures

Tools for genomic features in Julia.

14

IndexableBitVectors

Fully indexable dictionaries - access/rank/select operations

15

SubstitutionModels

Biological Sequence Substitution Models for Julia

16

BGZFStreams

BGZF Stream

17

WaveletMatrices

The Wavelet Matrix

18

Codecs

Common data encoding algorithms

19

BioServices

Julia interface to APIs for various bio-related web services

20

BioSymbols

Nucleic and amino acid primitive types

21

BioCore

Core types and interfaces for BioJulia packages

22

Phylogenies

The BioJulia package for working with phylogenetic trees and geneologies.

23

BioTools

Interfaces to common external biological tools from julia scripts and programs

24

BBI

25

BiobakeryUtils

A companion package for Microbiome.jl for working with the Biobakery family of computational tools