[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
A julia code generator for regular expressions
Biological sequences for the julia language
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Sequence alignment tools
For analysis of microbiome and microbial community data
A data structure for efficient manipulation of sets of intervals
Datastructures and algorithms for working with genetic variation
Fast, flexible zlib bindings.
Tools for genomic features in Julia.
Fast composable IO streams
Core types and interfaces for BioJulia packages
Nucleic and amino acid primitive types
Julia interface to APIs for various bio-related web services
FM-index for full-text search
Biological Sequence Substitution Models for Julia
BGZF Stream
Fully indexable dictionaries - access/rank/select operations
Interfaces to common external biological tools from julia scripts and programs
Common data encoding algorithms
The Wavelet Matrix
A julia package to parse and write MMTF file
The BioJulia package for working with phylogenetic trees and geneologies.
A companion package for Microbiome.jl for working with the Biobakery family of computational tools