Bioinformatics and Computational Biology Infrastructure for Julia
A julia code generator for regular expressions
Parse yer YAMLs
Biological sequences for the julia language
A data structure for efficient manipulation of sets of intervals
Fast composable IO streams
Fast, flexible zlib bindings.
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Sequence alignment tools
Datastructures and algorithms for working with genetic variation
For analysis of microbiome and microbial community data
FM-index for full-text search
Tools for genomic features in Julia.
Fully indexable dictionaries - access/rank/select operations
Biological Sequence Substitution Models for Julia
BGZF Stream
The Wavelet Matrix
Common data encoding algorithms
Julia interface to APIs for various bio-related web services
Nucleic and amino acid primitive types
Core types and interfaces for BioJulia packages
The BioJulia package for working with phylogenetic trees and geneologies.
Interfaces to common external biological tools from julia scripts and programs
A companion package for Microbiome.jl for working with the Biobakery family of computational tools