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Top Pkgs Packages

1

Bio

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

2

Automa

A julia code generator for regular expressions

3

BioSequences

Biological sequences for the julia language

4

BioStructures

A Julia package to read, write and manipulate macromolecular structures (particularly proteins)

5

BioAlignments

Sequence alignment tools

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IntervalTrees

A data structure for efficient manipulation of sets of intervals

7

Microbiome

For analysis of microbiome and microbial community data

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GeneticVariation

Datastructures and algorithms for working with genetic variation

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Libz

Fast, flexible zlib bindings.

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BioCore

Core types and interfaces for BioJulia packages

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GenomicFeatures

Tools for genomic features in Julia.

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BufferedStreams

Fast composable IO streams

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BioSymbols

Nucleic and amino acid primitive types

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FMIndexes

FM-index for full-text search

15

BioServices

Julia interface to APIs for various bio-related web services

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SubstitutionModels

Biological Sequence Substitution Models for Julia

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IndexableBitVectors

Fully indexable dictionaries - access/rank/select operations

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BGZFStreams

BGZF Stream

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BioTools

Interfaces to common external biological tools from julia scripts and programs

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WaveletMatrices

The Wavelet Matrix

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Codecs

Common data encoding algorithms

22

Phylogenies

The BioJulia package for working with phylogenetic trees and geneologies.

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MMTF

A julia package to parse and write MMTF file

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BBI

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BiobakeryUtils

A companion package for Microbiome.jl for working with the Biobakery family of computational tools