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Top Pkgs Packages

1

Bio

Bioinformatics and Computational Biology Infrastructure for Julia

2

Automa

A julia code generator for regular expressions

3

YAML

Parse yer YAMLs

4

BioSequences

Biological sequences for the julia language

5

IntervalTrees

A data structure for efficient manipulation of sets of intervals

6

BufferedStreams

Fast composable IO streams

7

Libz

Fast, flexible zlib bindings.

8

BioStructures

A julia package to read, write and manipulate macromolecular structures (particularly proteins)

9

SubstitutionModels

Biological Sequence Substitution Models for Julia

10

FMIndexes

FM-index for full-text search

11

BioAlignments

Sequence alignment tools

12

Microbiome

For analysis of microbiome and microbial community data

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BGZFStreams

BGZF Stream

14

IndexableBitVectors

Fully indexable dictionaries - access/rank/select operations

15

WaveletMatrices

The Wavelet Matrix

16

Codecs

Common data encoding algorithms

17

BioSymbols

Nucleic and amino acid primitive types

18

GenomicFeatures

Tools for genomic features in Julia.

19

BioServices

Julia interface to APIs for various bio-related web services

20

BioCore

Core types and interfaces for BioJulia packages

21

Phylogenies

The BioJulia package for working with phylogenetic trees and geneologies.

22

BioTools

Interfaces to common external biological tools from julia scripts and programs

23

BBI

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BiobakeryUtils

A companion package for Microbiome.jl for working with the Biobakery family of computational tools