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BioMedQuery

Julia utilities to interact with BioMedical Databases and APIs

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BioMedQuery

Latest Release MIT license DOI Lifecycle

Documentation

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Description

Julia utilities to process and save results from BioMedical databases/APIs.

BioServices.jl (part of BioJulia) provides the basic interface to some of the APIs, while BioMedQuery helps parse and save results into MySQL, SQLite, DataFrames, CSV etc.

Supported APIs include:

National Library of Medicine (NLM)

Installation

BioMedQuery is a registered package. To install the latest stable version, use the package manager.

using Pkg
Pkg.add("BioMedQuery")

To use the latest development version:

using Pkg
Pkg.add("BioMedQuery#master")

To checkout the latest development version:

using Pkg
Pkg.dev("BioMedQuery")

Testing

BioMedQuery is tested against Julia 0.7 and current 1.X on Linux, and OS X.

Latest CI Build
codecov

First Commit

05/23/2016

Last Touched

2 days ago

Commits

583 commits

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