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A package to run Stan's cmdstan executable from Julia.
For more info on Stan, please go to http://mc-stan.org.
The Julia package CmdStan.jl is based on Stan's command line interface, 'cmdstan'.
The 'cmdstan' interface needs to be installed separatedly. Please see cmdstan installation for further details.
The location of the cmdstan executable and related programs is now obtained from the environment variable JULIA_CMDSTAN_HOME. This used to be CMDSTAN_HOME.
versioninfo() will show its setting (if defined).
extracthas been added to simplify grouping variables into a NamedTuple.
Release 6.0.0 contains:
Release 6.0.0 is a breaking release.
To revert back to v5.x behavior a script needs to include
using MCMCChains (which thus must be installed) and specify
output_format=:mcmcchains in the call to
stanmodel(). This option is not tested on Travis. A sub-directory examples_mcmcchains has been added which demonstrate this usage pattern.
CmdStan.jl tested on cmdstan v2.21.0.
Question and contributions are very welcome, as are feature requests and suggestions. Please open an issue if you encounter any problems or have a question.
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22 days ago