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GeneMisc

Gene Synonym and Location for Homo Sapiens

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GeneMisc

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This project is under active developing, if you encountered any troubles, open an issue please.

I am refactoring this package now, any suggestion is more than welcome.

What can GeneMisc do now?

  • Given a location, find gene.
  • Given a location, find nearest gene name and exon number.

  • Given a gene nane, find its location.

  • Given a gene name, find its synonyms genes, but the synonyms genes may not complete due to the limitation of our data.

Add GeneMisc

Pkg.clone("https://github.com/OpenGene/GeneMisc.jl.git")
Pkg.build("GeneMisc")
Pkg.test("GeneMisc")

For more information, please refer to the documentation.

Examples of Usage

query a gene for its synonym

using GeneMisc
query_gene("TP53")

query a lot of genes

using GeneMisc
genes = ASCIIString["TP53","KRAS","BRCA"]
query_gene(genes)

query a gene given its location

using GeneMisc
chr = "chr1"
pos = "12235"
query_gene(chr,pos)

query a lot of genes given their locations

using GeneMisc
chr_pos = ["chr1" "123234";
           "chr2", "21424"]
query_gene(chr_pos)

First Commit

12/24/2015

Last Touched

over 4 years ago

Commits

107 commits

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Used By: