This project is under active developing, if you encountered any troubles, open an issue please.
I am refactoring this package now, any suggestion is more than welcome.
Given a location, find nearest gene name and exon number.
Given a gene nane, find its location.
Given a gene name, find its synonyms genes, but the synonyms genes may not complete due to the limitation of our data.
Pkg.clone("https://github.com/OpenGene/GeneMisc.jl.git") Pkg.build("GeneMisc") Pkg.test("GeneMisc")
For more information, please refer to the documentation.
query a gene for its synonym
using GeneMisc query_gene("TP53")
query a lot of genes
using GeneMisc genes = ASCIIString["TP53","KRAS","BRCA"] query_gene(genes)
query a gene given its location
using GeneMisc chr = "chr1" pos = "12235" query_gene(chr,pos)
query a lot of genes given their locations
using GeneMisc chr_pos = ["chr1" "123234"; "chr2", "21424"] query_gene(chr_pos)
almost 4 years ago