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GenomicFeatures

Tools for genomic features in Julia.

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GenomicFeatures

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Description

GenomicFeatures provides utilities for working with interval based genomic annotations. It builds on IntervalTrees to provide a data-structures, algorithms and IO tools for various formats such as BED, GFF3, bigWig and bigBed.

Installation

Install GenomicFeatures from the Julia REPL:

using Pkg
add("GenomicFeatures")
#Pkg.add("GenomicFeatures") for julia prior to v 0.7

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

Testing

GenomicFeatures is tested against julia 0.6 and current 0.7-dev on Linux, OS X, and Windows.

Latest release Latest build status
julia06 julia07 travis appveyor coverage

Contributing and Questions

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.

Take a look at the CONTRIBUTING file provided with this package for detailed contributor and maintainer guidelines.

If you have a question about contributing or using this package, come on over and chat to us on Discord, or you can try the Bio category of the Julia discourse site.

First Commit

06/13/2017

Last Touched

1 day ago

Commits

30 commits