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Microbiome

For analysis of microbiome and microbial community data

Readme

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Latest Release

Latest Release Docs stable License Project Status: Active – The project has reached a stable, usable state and is being actively developed.

Development Status

BioJulia maintainer: kescobo Docs dev CI codecov

Description

Microbiome.jl is a package for manipulating and analyzing microbiome and microbial community data.

Installation

Install Microbiome from the Julia REPL:

julia> using Pkg

julia> pkg"add Microbiome"

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

julia> pkg"add Microbiome#master"

Companion Packages

  • You might also be interested in some functionality provided by BiobakeryUtils.jl.
  • Microbiome.jl uses EcoBase under the hood for many of its types and methods.
  • Microbiome.jl has a Tables.jl interface, so you can convert CommunityProfiles to any Tables.jl-compatible sink.
    • CommunityProfile is not yet a sink itself

First Commit

08/24/2017

Last Touched

1 day ago

Commits

221 commits