PhyloModels.jl is a package for performing genetic sequence simulation from specified phylogenetic trees (using PhyloTrees.jl for phylogenetic tree specification, and SubstitutionModels.jl for nucleic acid substitution model specification), and for loglikelihood calculation of phylogenetic trees using Felsenstein's tree pruning algorithm¹.
¹ Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of molecular evolution, 17(6), 368-376.
The current release can be installed from the Julia REPL with:
pkg> add PhyloModels
The development version (master branch) can be installed with:
pkg> add PhyloModels#master
9 months ago