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PhyloModels

Phylogenetic simulation and inference in Julia

Readme

PhyloModels.jl

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PhyloModels.jl is a package for performing genetic sequence simulation from specified phylogenetic trees (using PhyloTrees.jl for phylogenetic tree specification, and SubstitutionModels.jl for nucleic acid substitution model specification), and for loglikelihood calculation of phylogenetic trees using Felsenstein's tree pruning algorithm¹.

¹ Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of molecular evolution, 17(6), 368-376.

Installation

The current release can be installed from the Julia REPL with:

pkg> add PhyloModels

The development version (master branch) can be installed with:

pkg> add PhyloModels#master

First Commit

11/30/2016

Last Touched

about 1 month ago

Commits

52 commits

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