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Sobol

generation of Sobol low-discrepancy sequence (LDS) for the Julia language

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The Sobol module for Julia

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This module provides a free Julia-language Sobol low-discrepancy-sequence (LDS) implementation. This generates "quasi-random" sequences of points in N dimensions which are equally distributed over an N-dimensional hypercube.

The advantage of an LDS over truly random (or pseudo-random) numbers is that an LDS (which is not random) tends to be more evenly distributed for finite numbers of points. This is used in quasi-Monte Carlo methods in order to accelerate convergence compared to traditional Monte Carlo methods employing random sequences.

It can be installed using the Julia package manager via Pkg.add("Sobol").

Algorithm

This is an independent implementation, originally by Steven G. Johnson, of the algorithm for generation of Sobol sequences in up to 1111 dimensions described in:

  • P. Bratley and B. L. Fox, Algorithm 659, ACM Trans. Math. Soft. 14 (1), pp. 88-100 (1988).
  • S. Joe and F. Y. Kuo, ACM Trans. Math. Soft 29 (1), 49-57 (2003).

Originally implemented in C in 2007 as part of the NLopt library for nonlinear optimization, the code was subsequently converted by Ken-B into pure Julia with roughly the same performance.

It is important to emphasize that SGJ's implementation was based on the mathematical description of the algorithms only, and was done without reference to the Fortran code from the Trans. Math. Soft. (TOMS) papers. The reason is that TOMS code is not free/open-source software (it falls under restrictive ACM copyright terms). (SGJ did re-use a table of primitive polynomials and coefficients from the TOMS code, but since this is merely a tabulation of mathematical facts it is not copyrightable.) SGJ's implementation in NLopt, along with this Julia translation, is free/open-source software under the MIT ("expat") license.

Technically, we implement a 32-bit Sobol sequence. After 232-1 points, the sequence terminates, and subsequently our implementation returns pseudo-random numbers generated by the Mersenne Twister algorithm. In practical applications, however, this point is rarely reached.

Usage

To initialize a Sobol sequence s in N dimensions (0 < N < 1112), use the SobolSeq constructor:

using Sobol
s = SobolSeq(N)

Then

x = next(s)

returns the next point (a Vector{Float64}) in the sequence; each point lies in the hypercube [0,1]N. You can also compute the next point in-place with

next!(s, x)

where x should be a Vector{Float64} of length N.

You can also use a SobolSeq as an iterator in Julia:

for x in SobolSeq(N)
   ...
end

Note, however, that the loop will never terminate unless you explicitly call break (or similar) in the loop body at some point of your choosing.

We also provide a different SobolSeq constructor to provide a Sobol sequence rescaled to an arbitrary hypercube:

s = SobolSeq(N, lb, ub)

where lb and ub are arrays (or other iterables) of length N, giving the lower and upper bounds of the hypercube, respectively. For example, SobolSeq(2, [-1,0,0],[1,3,2]) generates points in the box [-1,1]×[0,3]×[0,2].

If you know in advance the number n of points that you plan to generate, some authors suggest that better uniformity can be attained by first skipping the initial portion of the LDS (and in particular, the first power of two smaller than n; see Joe and Kuo, 2003). This facility is provided by:

skip(s, n)

Example

Here is a simple example, generating 1024 points in two dimensions and plotting them with the PyPlot package. Note the highly uniform, nonrandom distribution of points in the [0,1]×[0,1] unit square!

using Sobol
using PyPlot
s = SobolSeq(2)
p = hcat([next(s) for i = 1:1024]...)'
subplot(111, aspect="equal")
plot(p[:,1], p[:,2], "r.")

plot of 1024 points of a 2d Sobol sequence

Author

This module was written by Steven G. Johnson.

First Commit

01/24/2014

Last Touched

about 2 months ago

Commits

27 commits

Requires:

Used By: