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SubstitutionModels

Biological Sequence Substitution Models for Julia

Readme

SubstitutionModels.jl

Release status:

DOI Latest Release License BioJulia maintainer: jangevaare

Development status:

Build Status codecov.io

Description

SubstitutionModels.jl provides facilities to model the substitution process of biological sequences. Such models are essential for the analysis of sequence evolution, phylogenetics, and simulation.

We first aim to provide the most common substitution models used in the literature, but aim to build an extendable framework using julia's type system and traits, so as custom model types can be created and used.

Installation

The current release version can be installed from the Julia REPL:

julia> using Pkg
julia> add("SubstitutionModels")

Contributing and Questions

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features. Please go to the contributing section of the documentation for more information.

If you have a question about contributing or using this package, you are encouraged to use the Bio category of the Julia discourse site.

First Commit

07/22/2017

Last Touched

3 months ago

Commits

78 commits

Used By: