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Bio

Bioinformatics and Computational Biology Infrastructure for Julia

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Gillespie

Stochastic Gillespie-type simulations using Julia

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DiffEqBiological

DiffEq related functionality for defining biological models

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Whippet

Lightweight and Fast; RNA-seq quantification at the event-level

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PhyloNetworks

A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

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NetworkInference

Methods for inferring undirected networks from data

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SpatialEcology

Julia framework for spatial ecology - data types and utilities

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BioSequences

Biological sequences for the julia language

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SubstitutionModels

Biological Sequence Substitution Models for Julia

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COBRA

High-level, high-performance, constraint-based reconstruction and analysis in Julia

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Twiddle

A collection of useful bit-twiddling tricks in Julia.

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BioTools

Interfaces to common external biological tools from julia scripts and programs

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NKLandscapes

A Julia library for working with the NK family of fitness landscapes.

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GeneralizedMetropolisHastings

Parallel MCMC implementation, the core package of the Quantifying Uncertainty project

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Brim

BRIM -- use EcologicalNetwork.jl instead